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"structure_RLum", "subset_SingleGrainData", "template_DRAC", "trim_RLum.Data", "tune_Data", "use_DRAC", "verify_SingleGrainData", "view", "write_R2BIN", "write_R2TIFF", "write_RLum2CSV" ], "_datasets": [ { "name": "BaseDataSet.ConversionFactors", "title": "Base datasets", "object": "BaseDataSet.ConversionFactors", "file": "BaseDataSet.ConversionFactors.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "BaseDataSet.FractionalGammaDose", "title": "Base datasets", "object": "BaseDataSet.FractionalGammaDose", "file": "BaseDataSet.FractionalGammaDose.rda", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "BaseDataSet.GrainSizeAttenuation", "title": "Base datasets", "object": "BaseDataSet.GrainSizeAttenuation", "file": "BaseDataSet.GrainSizeAttenuation.rda", "class": [ "data.frame" ], "fields": [ "GrainSize", "Q_K", "FS_K", "Q_Th", "FS_Th", "Q_U", "FS_U" ], "rows": 16, "table": true, "tojson": true }, { "name": "CW_Curve.BosWallinga2012", "title": "Example CW-OSL curve data for the package Luminescence", "object": "ExampleData.CW_OSL_Curve", "file": "ExampleData.CW_OSL_Curve.rda", "class": [ "data.frame" ], "fields": [ "t", "cts" ], "rows": 2000, "table": true, "tojson": true }, { "name": "CWOSL.SAR.Data", "title": "Example data from a SAR OSL and SAR TL measurement for the package Luminescence", "object": "ExampleData.BINfileData", "file": "ExampleData.BINfileData.rda", "class": [ "Risoe.BINfileData" ], "fields": [], "table": false, "tojson": false }, { "name": "data_CrossTalk", "title": "Example Al2O3:C Measurement Data", "object": "ExampleData.Al2O3C", "file": "ExampleData.Al2O3C.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "data_ITC", "title": "Example Al2O3:C Measurement Data", "object": "ExampleData.Al2O3C", "file": "ExampleData.Al2O3C.rda", "class": [ "RLum.Analysis" ], "fields": [], "table": false, "tojson": false }, { "name": "ExampleData.CobbleData", "title": "Example data for calc_CobbleDoseRate()", "object": "ExampleData.CobbleData", "file": "ExampleData.CobbleData.rda", "class": [ "data.frame" ], "fields": [ "Distance", "DistanceError", "Thickness", "ThicknessError", "Mineral", "Cobble_K", "C_K_SE", "Cobble_Th", "Cobble_Th_SE", "Cobble_U", "Cobble_U_SE", "GrainSize", "Density", "CobbleDiameter", "Sed_K", "Sed_K_SE", "Sed_Th", "Sed_Th_SE", "Sed_U", "Sed_U_SE", "GrainSize_Sed", "Density_Sed", "WaterContent", "WaterContent_SE" ], "rows": 14, "table": true, "tojson": true }, { "name": "ExampleData.CW_OSL_Curve", "title": "Example CW-OSL curve data for the package Luminescence", "object": "ExampleData.CW_OSL_Curve", "file": "ExampleData.CW_OSL_Curve.rda", "class": [ "data.frame" ], "fields": [ "x", "y" ], "rows": 1000, "table": true, "tojson": true }, { "name": "ExampleData.DeValues", "title": "Example De data sets for the package Luminescence", "object": "ExampleData.DeValues", "file": "ExampleData.DeValues.rda", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "ExampleData.Fading", "title": "Example data for feldspar fading measurements", "object": "ExampleData.Fading", "file": "ExampleData.Fading.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "ExampleData.portableOSL", "title": "Example portable OSL curve data for the package Luminescence", "object": "ExampleData.portableOSL", "file": "ExampleData.portableOSL.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "ExampleData.RLum.Data.Image", "title": "Example data as RLum.Data.Image objects", "object": "ExampleData.RLum.Data.Image", "file": "ExampleData.RLum.Data.Image.rda", "class": [ "RLum.Data.Image" ], "fields": [], "table": false, "tojson": false }, { "name": "ExampleData.ScaleGammaDose", "title": "Example data for scale_GammaDose()", "object": "ExampleData.ScaleGammaDose", "file": "ExampleData.ScaleGammaDose.rda", "class": [ "data.frame" ], "fields": [ "id", "thickness", "sample_offset", "K", "K_se", "Th", "Th_se", "U", "U_se", "water_content", "water_content_se", "density" ], "rows": 9, "table": true, "tojson": true }, { "name": "ExampleData.SurfaceExposure", "title": "Example OSL surface exposure dating data", "object": "ExampleData.SurfaceExposure", "file": "ExampleData.SurfaceExposure.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "ExampleData.TR_OSL", "title": "Example TR-OSL data", "object": "ExampleData.TR_OSL", "file": "ExampleData.TR_OSL.rda", "class": [ "RLum.Data.Curve" ], "fields": [], "table": false, "tojson": false }, { "name": "IRSAR.RF.Data", "title": "Example data as RLum.Analysis objects", "object": "ExampleData.RLum.Analysis", "file": "ExampleData.RLum.Analysis.rda", "class": [ "RLum.Analysis" ], "fields": [], "table": false, "tojson": false }, { "name": "Lx.data", "title": "Example Lx and Tx curve data from an artificial OSL measurement", "object": "ExampleData.LxTxOSLData", "file": "ExampleData.LxTxOSLData.rda", "class": [ "data.frame" ], "fields": [ "V1", "V2" ], "rows": 100, "table": true, "tojson": true }, { "name": "LxTxData", "title": "Example Lx/Tx data from CW-OSL SAR measurement", "object": "ExampleData.LxTxData", "file": "ExampleData.LxTxData.rda", "class": [ "data.frame" ], "fields": [ "Dose", "LxTx", "LxTx.Error", "TnTx" ], "rows": 7, "table": true, "tojson": true }, { "name": "MortarData", "title": "Example equivalent dose data from mortar samples", "object": "ExampleData.MortarData", "file": "ExampleData.MortarData.rda", "class": [ "data.frame" ], "fields": [ "ED_sel", "ED_sel_Err" ], "rows": 40, "table": true, "tojson": true }, { "name": "OSL.SARMeasurement", "title": "Example data for a SAR OSL measurement and a TL spectrum using a lexsyg reader", "object": "ExampleData.XSYG", "file": "ExampleData.XSYG.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "RF70Curves", "title": "RF70 Example data as RLum.Analysis objects", "object": "ExampleData.RF70Curves", "file": "ExampleData.RF70Curves.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "TL.SAR.Data", "title": "Example data from a SAR OSL and SAR TL measurement for the package Luminescence", "object": "ExampleData.BINfileData", "file": "ExampleData.BINfileData.rda", "class": [ "Risoe.BINfileData" ], "fields": [], "table": false, "tojson": false }, { "name": "TL.Spectrum", "title": "Example data for a SAR OSL measurement and a TL spectrum using a lexsyg reader", "object": "ExampleData.XSYG", "file": "ExampleData.XSYG.rda", "class": [ "RLum.Data.Spectrum" ], "fields": [], "table": false, "tojson": false }, { "name": "Tx.data", "title": "Example Lx and Tx curve data from an artificial OSL measurement", "object": "ExampleData.LxTxOSLData", "file": "ExampleData.LxTxOSLData.rda", "class": [ "data.frame" ], "fields": [ "V1", "V2" ], "rows": 100, "table": true, "tojson": true }, { "name": "values.cosmic.Softcomp", "title": "Base data set for cosmic dose rate calculation", "object": "BaseDataSet.CosmicDoseRate", "file": "BaseDataSet.CosmicDoseRate.rda", "class": [ "data.frame" ], "fields": [ "depth", "cosmic.dose.rate" ], "rows": 33, "table": true, "tojson": true }, { "name": "values.curve", "title": "Example data for fit_LMCurve() in the package Luminescence", "object": "ExampleData.FittingLM", "file": "ExampleData.FittingLM.rda", "class": [ "data.frame" ], "fields": [ "x", "y" ], "rows": 4000, "table": true, "tojson": true }, { "name": "values.curveBG", "title": "Example data for fit_LMCurve() in the package Luminescence", "object": "ExampleData.FittingLM", "file": "ExampleData.FittingLM.rda", "class": [ "data.frame" ], "fields": [ "x", "y" ], "rows": 4000, "table": true, "tojson": true }, { "name": "values.factor.Altitude", "title": "Base data set for cosmic dose rate calculation", "object": "BaseDataSet.CosmicDoseRate", "file": "BaseDataSet.CosmicDoseRate.rda", "class": [ "data.frame" ], "fields": [ "altitude", "factor" ], "rows": 7, "table": true, "tojson": true }, { "name": "values.par.FJH", "title": "Base data set for cosmic dose rate calculation", "object": "BaseDataSet.CosmicDoseRate", "file": "BaseDataSet.CosmicDoseRate.rda", "class": [ "data.frame" ], "fields": [ "Geom. lat.", "F", "J", "H" ], "rows": 12, "table": true, "tojson": true } ], "_help": [ { "page": "Luminescence-package", "title": "Comprehensive Luminescence Dating Data Analysis", "topics": [ "Luminescence-package", "Luminescence" ] }, { "page": "metadata", "title": "Safe manipulation of object metadata", "topics": [ "add_metadata<-", "add_metadata<-,Risoe.BINfileData-method", "add_metadata<-,RLum.Analysis-method", "add_metadata<-,RLum.Data-method", "rename_metadata<-", "rename_metadata<-,Risoe.BINfileData-method", "rename_metadata<-,RLum.Analysis-method", "rename_metadata<-,RLum.Data-method", "replace_metadata<-", "replace_metadata<-,Risoe.BINfileData-method", "replace_metadata<-,RLum.Analysis-method", "replace_metadata<-,RLum.Data-method" ] }, { "page": "analyse_Al2O3C_CrossTalk", "title": "Al2O3:C Reader Cross-Talk Analysis", "topics": [ "analyse_Al2O3C_CrossTalk" ] }, { "page": "analyse_Al2O3C_ITC", "title": "Al2O3 Irradiation Time Correction Analysis", "topics": [ "analyse_Al2O3C_ITC" ] }, { "page": "analyse_Al2O3C_Measurement", "title": "Al2O3:C Passive Dosimeter Measurement Analysis", "topics": [ "analyse_Al2O3C_Measurement" ] }, { "page": "analyse_baSAR", "title": "Bayesian models (baSAR) applied on luminescence data", "topics": [ "analyse_baSAR" ] }, { "page": "analyse_FadingMeasurement", "title": "Analyse fading measurements and returns the fading rate per decade (g-value)", "topics": [ "analyse_FadingMeasurement" ] }, { "page": "analyse_IRSAR.RF", "title": "Analyse IRSAR RF measurements", "topics": [ "analyse_IRSAR.RF" ] }, { "page": "analyse_pIRIRSequence", "title": "Analyse post-IR IRSL measurement sequences", "topics": [ "analyse_pIRIRSequence" ] }, { "page": "analyse_portableOSL", "title": "Analyse portable CW-OSL measurements", "topics": [ "analyse_portableOSL" ] }, { "page": "analyse_SAR.CWOSL", "title": "Analyse SAR CW-OSL Measurements", "topics": [ "analyse_SAR.CWOSL" ] }, { "page": "analyse_SAR.TL", "title": "Analyse SAR TL measurements", "topics": [ "analyse_SAR.TL" ] }, { "page": "analyse_ThermochronometryData", "title": "Analyse Thermochronometry Data", "topics": [ "analyse_ThermochronometryData" ] }, { "page": "apply_CosmicRayRemoval", "title": "Cosmic-ray removal and spectrum smoothing for RLum.Data.Spectrum objects", "topics": [ "apply_CosmicRayRemoval" ] }, { "page": "apply_Crosstalk", "title": "Apply crosstalk", "topics": [ "apply_Crosstalk" ] }, { "page": "apply_EfficiencyCorrection", "title": "Apply spectral efficiency correction to RLum.Data.Spectrum objects", "topics": [ "apply_EfficiencyCorrection" ] }, { "page": "as", "title": "as() - RLum-object coercion", "topics": [ "as" ] }, { "page": "BaseDataSet", "title": "Base datasets", "topics": [ "BaseDataSet", "BaseDataSet.ConversionFactors", "BaseDataSet.FractionalGammaDose", "BaseDataSet.GrainSizeAttenuation" ] }, { "page": "bin_RLum.Data", "title": "Channel binning for RLum.Data-class objects", "topics": [ "bin_RLum.Data", "bin_RLum.Data,RLum.Data.Curve-method", "bin_RLum.Data,RLum.Data.Spectrum-method" ] }, { "page": "calc_AliquotSize", "title": "Estimate the amount of grains on an aliquot", "topics": [ "calc_AliquotSize" ] }, { "page": "calc_AverageDose", "title": "Calculate the Average Dose and the dose rate dispersion", "topics": [ "calc_AverageDose" ] }, { "page": "calc_CentralDose", "title": "Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution", "topics": [ "calc_CentralDose" ] }, { "page": "calc_CobbleDoseRate", "title": "Calculate dose rate of slices in a spherical cobble", "topics": [ "calc_CobbleDoseRate" ] }, { "page": "calc_CommonDose", "title": "Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution", "topics": [ "calc_CommonDose" ] }, { "page": "calc_CosmicDoseRate", "title": "Calculate the cosmic dose rate", "topics": [ "calc_CosmicDoseRate" ] }, { "page": "calc_EED_Model", "title": "Modelling Exponential Exposure Distribution", "topics": [ "calc_EED_Model" ] }, { "page": "calc_FadingCorr", "title": "Fading Correction after Huntley & Lamothe (2001)", "topics": [ "calc_FadingCorr" ] }, { "page": "calc_FastRatio", "title": "Calculate the Fast Ratio for CW-OSL curves", "topics": [ "calc_FastRatio" ] }, { "page": "calc_FiniteMixture", "title": "Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution", "topics": [ "calc_FiniteMixture" ] }, { "page": "calc_FuchsLang2001", "title": "Apply the model after Fuchs & Lang (2001) to a given De distribution", "topics": [ "calc_FuchsLang2001" ] }, { "page": "calc_gSGC", "title": "Calculate De value based on the gSGC by Li et al., 2015", "topics": [ "calc_gSGC" ] }, { "page": "calc_gSGC_feldspar", "title": "Calculate Global Standardised Growth Curve (gSGC) for Feldspar MET-pIRIR", "topics": [ "calc_gSGC_feldspar" ] }, { "page": "calc_HomogeneityTest", "title": "Apply a simple homogeneity test after Galbraith (2003)", "topics": [ "calc_HomogeneityTest" ] }, { "page": "calc_Huntley2006", "title": "Apply the Huntley (2006) model", "topics": [ "calc_Huntley2006" ] }, { "page": "calc_IEU", "title": "Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution", "topics": [ "calc_IEU" ] }, { "page": "calc_Lamothe2003", "title": "Apply fading correction after Lamothe et al., 2003", "topics": [ "calc_Lamothe2003" ] }, { "page": "calc_MaxDose", "title": "Apply the maximum age model to a given De distribution", "topics": [ "calc_MaxDose" ] }, { "page": "calc_MinDose", "title": "(Un-)logged minimum age model (MAM) after Galbraith et al. (1999)", "topics": [ "calc_MinDose" ] }, { "page": "calc_MoransI", "title": "Calculate Moran's I", "topics": [ "calc_MoransI" ] }, { "page": "calc_OSLLxTxDecomposed", "title": "Calculate Lx/Tx ratio for decomposed CW-OSL signal components", "topics": [ "calc_OSLLxTxDecomposed" ] }, { "page": "calc_OSLLxTxRatio", "title": "Calculate 'Lx/Tx' ratio for CW-OSL curves", "topics": [ "calc_OSLLxTxRatio" ] }, { "page": "calc_SourceDoseRate", "title": "Calculation of the source dose rate via the date of measurement", "topics": [ "calc_SourceDoseRate" ] }, { "page": "calc_Statistics", "title": "Function to calculate statistic measures", "topics": [ "calc_Statistics" ] }, { "page": "calc_ThermalLifetime", "title": "Calculates the Thermal Lifetime using the Arrhenius equation", "topics": [ "calc_ThermalLifetime" ] }, { "page": "calc_TLLxTxRatio", "title": "Calculate the Lx/Tx ratio for a given set of TL curves -beta version-", "topics": [ "calc_TLLxTxRatio" ] }, { "page": "calc_WodaFuchs2008", "title": "Obtain the equivalent dose using the approach by Woda and Fuchs 2008", "topics": [ "calc_WodaFuchs2008" ] }, { "page": "combine_De_Dr", "title": "Combine Dose Rate and Equivalent Dose Distribution", "topics": [ "combine_De_Dr" ] }, { "page": "convert_Activity2Concentration", "title": "Convert Nuclide Activities to Abundance and Vice Versa", "topics": [ "convert_Activity2Concentration" ] }, { "page": "convert_BIN2CSV", "title": "Export Risoe BIN-file(s) to CSV-files", "topics": [ "convert_BIN2CSV" ] }, { "page": "convert_Concentration2DoseRate", "title": "Dose-rate conversion function", "topics": [ "convert_Concentration2DoseRate" ] }, { "page": "convert_CW2pHMi", "title": "Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions", "topics": [ "convert_CW2pHMi" ] }, { "page": "convert_CW2pLM", "title": "Transform a CW-OSL curve into a pLM-OSL curve", "topics": [ "convert_CW2pLM" ] }, { "page": "convert_CW2pLMi", "title": "Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions", "topics": [ "convert_CW2pLMi" ] }, { "page": "convert_CW2pPMi", "title": "Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions", "topics": [ "convert_CW2pPMi" ] }, { "page": "convert_Daybreak2CSV", "title": "Export measurement data produced by a Daybreak luminescence reader to CSV-files", "topics": [ "convert_Daybreak2CSV" ] }, { "page": "convert_PSL2CSV", "title": "Export PSL-file(s) to CSV-files", "topics": [ "convert_PSL2CSV" ] }, { "page": "convert_PSL2Risoe.BINfileData", "title": "Convert portable OSL data to a Risoe.BINfileData object", "topics": [ "convert_PSL2Risoe.BINfileData" ] }, { "page": "convert_RLum2Risoe.BINfileData", "title": "Converts RLum.Analysis and RLum.Data.Curve objects to RLum2Risoe.BINfileData objects", "topics": [ "convert_RLum2Risoe.BINfileData" ] }, { "page": "convert_Second2Gray", "title": "Converting equivalent dose values from seconds (s) to Gray (Gy)", "topics": [ "convert_Second2Gray" ] }, { "page": "convert_SG2MG", "title": "Converts Single-Grain Data to Multiple-Grain Data", "topics": [ "convert_SG2MG" ] }, { "page": "convert_Wavelength2Energy", "title": "Emission Spectra Conversion from Wavelength to Energy Scales (Jacobian Conversion)", "topics": [ "convert_Wavelength2Energy" ] }, { "page": "convert_XSYG2CSV", "title": "Export XSYG-file(s) to CSV-files", "topics": [ "convert_XSYG2CSV" ] }, { "page": "correct_PMTLinearity", "title": "Dead-time (linearity) Correction for Photomultiplier tubes (PMT)", "topics": [ "correct_PMTLinearity" ] }, { "page": "ExampleData", "title": "All examples", "topics": [ "ExampleData" ] }, { "page": "ExampleData.CobbleData", "title": "Example data for calc_CobbleDoseRate()", "topics": [ "ExampleData.CobbleData" ] }, { "page": "ExampleData.DeValues", "title": "Example De data sets for the package Luminescence", "topics": [ "ExampleData.DeValues" ] }, { "page": "ExampleData.Fading", "title": "Example data for feldspar fading measurements", "topics": [ "ExampleData.Fading" ] }, { "page": "ExampleData.portableOSL", "title": "Example portable OSL curve data for the package Luminescence", "topics": [ "ExampleData.portableOSL" ] }, { "page": "ExampleData.RLum.Data.Image", "title": "Example data as RLum.Data.Image objects", "topics": [ "ExampleData.RLum.Data.Image" ] }, { "page": "ExampleData.ScaleGammaDose", "title": "Example data for scale_GammaDose()", "topics": [ "ExampleData.ScaleGammaDose" ] }, { "page": "ExampleData.SurfaceExposure", "title": "Example OSL surface exposure dating data", "topics": [ "ExampleData.SurfaceExposure" ] }, { "page": "ExampleData.TR_OSL", "title": "Example TR-OSL data", "topics": [ "ExampleData.TR_OSL" ] }, { "page": "extdata", "title": "Collection of External Data", "topics": [ "extdata" ] }, { "page": "extract_IrradiationTimes", "title": "Extract Irradiation Times from an XSYG-file or 'RLum.Analysis' object", "topics": [ "extract_IrradiationTimes" ] }, { "page": "extract_ROI", "title": "Extract Pixel Values through Circular Region-of-Interests (ROI) from an Image", "topics": [ "extract_ROI" ] }, { "page": "fit_CWCurve", "title": "Non-linear Least Squares Fit for CW-OSL curves -beta version-", "topics": [ "fit_CWCurve" ] }, { "page": "fit_DoseResponseCurve", "title": "Fit a dose-response curve for luminescence data (Lx/Tx against dose)", "topics": [ "fit_DoseResponseCurve" ] }, { "page": "fit_EmissionSpectra", "title": "Luminescence Emission Spectra Deconvolution", "topics": [ "fit_EmissionSpectra" ] }, { "page": "fit_IsothermalHolding", "title": "Fit Isothermal Holding Data", "topics": [ "fit_IsothermalHolding" ] }, { "page": "fit_LMCurve", "title": "Non-linear Least Squares Fit for LM-OSL curves", "topics": [ "fit_LMCurve" ] }, { "page": "fit_OSLLifeTimes", "title": "Fitting and Deconvolution of OSL Lifetime Components", "topics": [ "fit_OSLLifeTimes" ] }, { "page": "fit_SurfaceExposure", "title": "Nonlinear Least Squares Fit for OSL surface exposure data", "topics": [ "fit_SurfaceExposure" ] }, { "page": "fit_ThermalQuenching", "title": "Fitting Thermal Quenching Data", "topics": [ "fit_ThermalQuenching" ] }, { "page": "get_Layout", "title": "Collection of layout definitions", "topics": [ "get_Layout" ] }, { "page": "get_rightAnswer", "title": "Function to get the right answer", "topics": [ "get_rightAnswer" ] }, { "page": "get_RLum", "title": "General accessor function for RLum-class objects", "topics": [ "get_RLum", "get_RLum,list-method", "get_RLum,NULL-method", "get_RLum,RLum.Analysis-method", "get_RLum,RLum.Data.Curve-method", "get_RLum,RLum.Data.Image-method", "get_RLum,RLum.Data.Spectrum-method", "get_RLum,RLum.Results-method" ] }, { "page": "import_Data", "title": "Import Luminescence Data into R", "topics": [ "import_Data" ] }, { "page": "length_RLum", "title": "Length retrieval function for RLum-class objects", "topics": [ "length_RLum", "length_RLum,RLum.Analysis-method", "length_RLum,RLum.Data.Curve-method", "length_RLum,RLum.Results-method" ] }, { "page": "melt_RLum", "title": "Melt RLum-class objects into a flat data.frame", "topics": [ "melt_RLum", "melt_RLum,list-method", "melt_RLum,RLum.Analysis-method", "melt_RLum,RLum.Data.Curve-method" ] }, { "page": "merge_Risoe.BINfileData", "title": "Merge Risoe.BINfileData objects or Risoe BIN-files", "topics": [ "merge_Risoe.BINfileData" ] }, { "page": "merge_RLum", "title": "General merge function for RLum-class objects", "topics": [ "merge_RLum" ] }, { "page": "names_RLum", "title": "Name retrieval function for RLum-class objects", "topics": [ "names_RLum", "names_RLum,list-method", "names_RLum,RLum.Analysis-method", "names_RLum,RLum.Data.Curve-method", "names_RLum,RLum.Data.Image-method", "names_RLum,RLum.Data.Spectrum-method", "names_RLum,RLum.Results-method" ] }, { "page": "normalise_RLum", "title": "Normalisation of RLum-class objects", "topics": [ "normalise_RLum", "normalise_RLum,list-method", "normalise_RLum,RLum.Analysis-method", "normalise_RLum,RLum.Data.Curve-method", "normalise_RLum,RLum.Data.Image-method", "normalise_RLum,RLum.Data.Spectrum-method" ] }, { "page": "plot_AbanicoPlot", "title": "Function to create an Abanico Plot.", "topics": [ "plot_AbanicoPlot" ] }, { "page": "plot_DetPlot", "title": "Create De(t) plot", "topics": [ "plot_DetPlot" ] }, { "page": "plot_DoseResponseCurve", "title": "Plot a dose-response curve for luminescence data (Lx/Tx against dose)", "topics": [ "plot_DoseResponseCurve" ] }, { "page": "plot_DRCSummary", "title": "Create a Dose-Response Curve Summary Plot", "topics": [ "plot_DRCSummary" ] }, { "page": "plot_DRTResults", "title": "Visualise dose recovery test results", "topics": [ "plot_DRTResults" ] }, { "page": "plot_FilterCombinations", "title": "Plot filter combinations along with the (optional) net transmission window", "topics": [ "plot_FilterCombinations" ] }, { "page": "plot_GrowthCurve", "title": "Fit and plot a dose-response curve for luminescence data (Lx/Tx against dose)", "topics": [ "plot_GrowthCurve" ] }, { "page": "plot_Histogram", "title": "Plot a histogram with separate error plot", "topics": [ "plot_Histogram" ] }, { "page": "plot_KDE", "title": "Plot kernel density estimate with statistics", "topics": [ "plot_KDE" ] }, { "page": "plot_MoranScatterplot", "title": "Moran Scatter Plot: Visualizing Spatial Dependency", "topics": [ "plot_MoranScatterplot" ] }, { "page": "plot_NRt", "title": "Visualise natural/regenerated signal ratios", "topics": [ "plot_NRt" ] }, { "page": "plot_OSLAgeSummary", "title": "Plot Posterior OSL-Age Summary", "topics": [ "plot_OSLAgeSummary" ] }, { "page": "plot_RadialPlot", "title": "Function to create a Radial Plot", "topics": [ "plot_RadialPlot" ] }, { "page": "plot_Risoe.BINfileData", "title": "Plot Single Luminescence Curves from a Risoe.BINfileData-class object", "topics": [ "plot_Risoe.BINfileData" ] }, { "page": "plot_RLum", "title": "General plot function for RLum S4 class objects", "topics": [ "plot_RLum" ] }, { "page": "plot_RLum.Analysis", "title": "Plot function for an 'RLum.Analysis' S4 class object", "topics": [ "plot_RLum.Analysis" ] }, { "page": "plot_RLum.Data.Curve", "title": "Plot function for an RLum.Data.Curve S4 class object", "topics": [ "plot_RLum.Data.Curve" ] }, { "page": "plot_RLum.Data.Image", "title": "Plot function for an 'RLum.Data.Image' S4 class object", "topics": [ "plot_RLum.Data.Image" ] }, { "page": "plot_RLum.Data.Spectrum", "title": "Plot function for an RLum.Data.Spectrum S4 class object", "topics": [ "plot_RLum.Data.Spectrum" ] }, { "page": "plot_RLum.Results", "title": "Plot function for an RLum.Results S4 class object", "topics": [ "plot_RLum.Results" ] }, { "page": "plot_ROI", "title": "Create Regions of Interest (ROI) Graphic", "topics": [ "plot_ROI" ] }, { "page": "plot_SingleGrainDisc", "title": "Plot a disc with its values", "topics": [ "plot_SingleGrainDisc" ] }, { "page": "plot_ViolinPlot", "title": "Create a violin plot", "topics": [ "plot_ViolinPlot" ] }, { "page": "read_BIN2R", "title": "Import Risø BIN/BINX-files into R", "topics": [ "read_BIN2R" ] }, { "page": "read_BINXLOG2R", "title": "Import Risø BINX-data from the BINX Log File", "topics": [ "read_BINXLOG2R" ] }, { "page": "read_Daybreak2R", "title": "Import measurement data produced by a Daybreak TL/OSL reader into R", "topics": [ "read_Daybreak2R" ] }, { "page": "read_HeliosOSL2R", "title": "Import Luminescence Data from Helios Luminescence Reader", "topics": [ "read_HeliosOSL2R" ] }, { "page": "read_PSL2R", "title": "Import SUERC portable OSL Reader PSL files into R", "topics": [ "read_PSL2R" ] }, { "page": "read_RF2R", "title": "Import RF-files to R", "topics": [ "read_RF2R" ] }, { "page": "read_SPE2R", "title": "Import Princeton Instruments (TM) SPE-file into R", "topics": [ "read_SPE2R" ] }, { "page": "read_TIFF2R", "title": "Import TIFF Image Data into R", "topics": [ "read_TIFF2R" ] }, { "page": "read_XSYG2R", "title": "Import XSYG files into R", "topics": [ "read_XSYG2R" ] }, { "page": "remove_RLum", "title": "Strips records from RLum-class objects", "topics": [ "remove_RLum", "remove_RLum,list-method", "remove_RLum,RLum.Analysis-method" ] }, { "page": "remove_SignalBackground", "title": "Remove Signal Background from 'RLum.Data.Curve' Objects", "topics": [ "remove_SignalBackground" ] }, { "page": "replicate_RLum", "title": "General replication function for RLum-class objects", "topics": [ "replicate_RLum", "replicate_RLum,RLum-method" ] }, { "page": "report_RLum", "title": "Create a HTML-report for (RLum) objects", "topics": [ "report_RLum" ] }, { "page": "Risoe.BINfileData-class", "title": "Class '\"Risoe.BINfileData\"'", "topics": [ "Risoe.BINfileData-class", "set_Risoe.BINfileData,ANY-method" ] }, { "page": "Risoe.BINfileData2RLum.Analysis", "title": "Convert Risoe.BINfileData object to an RLum.Analysis object", "topics": [ "Risoe.BINfileData2RLum.Analysis" ] }, { "page": "RLum-class", "title": "Class '\"RLum\"'", "topics": [ "RLum-class" ] }, { "page": "RLum.Analysis-class", "title": "Class '\"RLum.Analysis\"'", "topics": [ "RLum.Analysis-class" ] }, { "page": "RLum.Data.Curve-class", "title": "Class '\"RLum.Data.Curve\"'", "topics": [ "RLum.Data.Curve-class" ] }, { "page": "RLum.Data.Image-class", "title": "Class '\"RLum.Data.Image\"'", "topics": [ "RLum.Data.Image-class" ] }, { "page": "RLum.Data.Spectrum-class", "title": "Class '\"RLum.Data.Spectrum\"'", "topics": [ "RLum.Data.Spectrum-class" ] }, { "page": "RLum.Results-class", "title": "Class '\"RLum.Results\"'", "topics": [ "RLum.Results-class" ] }, { "page": "scale_GammaDose", "title": "Calculate the gamma dose deposited within a sample taking layer-to-layer variations in radioactivity into account (according to Aitken, 1985)", "topics": [ "scale_GammaDose" ] }, { "page": "set_Risoe.BINfileData", "title": "General setter function for Risoe.BINfileData objects", "topics": [ "set_Risoe.BINfileData" ] }, { "page": "set_RLum", "title": "General setter function for RLum-class objects", "topics": [ "set_RLum", "set_RLum,RLum.Analysis-method", "set_RLum,RLum.Data.Curve-method", "set_RLum,RLum.Data.Image-method", "set_RLum,RLum.Data.Spectrum-method", "set_RLum,RLum.Results-method" ] }, { "page": "show", "title": "Show the structure of RLum-class and Risoe.BINfileData-class objects", "topics": [ "show", "show,Risoe.BINfileData-method", "show,RLum.Analysis-method", "show,RLum.Data.Curve-method", "show,RLum.Data.Image-method", "show,RLum.Data.Spectrum-method", "show,RLum.Results-method" ] }, { "page": "smooth_RLum", "title": "Smoothing of data for RLum-class objects", "topics": [ "smooth_RLum", "smooth_RLum,list-method", "smooth_RLum,RLum.Analysis-method", "smooth_RLum,RLum.Data.Curve-method" ] }, { "page": "sort_RLum", "title": "Sort data for RLum-class and Risoe.BINfileData-class objects", "topics": [ "sort_RLum", "sort_RLum,list-method", "sort_RLum,Risoe.BINfileData-method", "sort_RLum,RLum.Analysis-method" ] }, { "page": "sTeve", "title": "sTeve - sophisticated tool for efficient data validation and evaluation", "topics": [ "sTeve" ] }, { "page": "structure_RLum", "title": "General structure function for RLum-class objects", "topics": [ "structure_RLum", "structure_RLum,list-method", "structure_RLum,RLum.Analysis-method" ] }, { "page": "subset_SingleGrainData", "title": "Simple Subsetting of Single Grain Data from Risø BIN/BINX files", "topics": [ "subset_SingleGrainData" ] }, { "page": "template_DRAC", "title": "Create a DRAC input data template (v1.2)", "topics": [ "template_DRAC" ] }, { "page": "trim_RLum.Data", "title": "Trim Channels of RLum.Data-class Objects", "topics": [ "trim_RLum.Data" ] }, { "page": "tune_Data", "title": "Tune data for experimental purpose", "topics": [ "tune_Data" ] }, { "page": "use_DRAC", "title": "Use DRAC to calculate dose rate data", "topics": [ "use_DRAC" ] }, { "page": "verify_SingleGrainData", "title": "Verify single grain data sets and check for invalid grains, i.e. zero-light level grains", "topics": [ "verify_SingleGrainData" ] }, { "page": "view", "title": "Convenience data visualisation function", "topics": [ "view", "view,Risoe.BINfileData-method", "view,RLum.Analysis-method", "view,RLum.Data-method", "view,RLum.Results-method" ] }, { "page": "write_R2BIN", "title": "Export Risoe.BINfileData into Risø BIN/BINX-file", "topics": [ "write_R2BIN" ] }, { "page": "write_R2TIFF", "title": "Export RLum.Data.Image and RLum.Data.Spectrum objects to TIFF Images", "topics": [ "write_R2TIFF" ] }, { "page": "write_RLum2CSV", "title": "Export RLum-objects to CSV", "topics": [ "write_RLum2CSV" ] } ], "_readme": "https://github.com/r-lum/luminescence/raw/HEAD/README.md", "_rundeps": [ "askpass", "bbmle", "bdsmatrix", "curl", "data.table", "deldir", "DEoptim", "httr", "interp", "jsonlite", "lamW", "lattice", "MASS", "Matrix", "matrixStats", 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