| Comprehensive Luminescence Dating Data Analysis | Luminescence-package Luminescence |
| Safe manipulation of object metadata | add_metadata<- add_metadata<-,Risoe.BINfileData-method add_metadata<-,RLum.Analysis-method add_metadata<-,RLum.Data-method rename_metadata<- rename_metadata<-,Risoe.BINfileData-method rename_metadata<-,RLum.Analysis-method rename_metadata<-,RLum.Data-method replace_metadata<- replace_metadata<-,Risoe.BINfileData-method replace_metadata<-,RLum.Analysis-method replace_metadata<-,RLum.Data-method |
| Al2O3:C Reader Cross-Talk Analysis | analyse_Al2O3C_CrossTalk |
| Al2O3 Irradiation Time Correction Analysis | analyse_Al2O3C_ITC |
| Al2O3:C Passive Dosimeter Measurement Analysis | analyse_Al2O3C_Measurement |
| Bayesian models (baSAR) applied on luminescence data | analyse_baSAR |
| Analyse fading measurements and returns the fading rate per decade (g-value) | analyse_FadingMeasurement |
| Analyse IRSAR RF measurements | analyse_IRSAR.RF |
| Analyse post-IR IRSL measurement sequences | analyse_pIRIRSequence |
| Analyse portable CW-OSL measurements | analyse_portableOSL |
| Analyse SAR CW-OSL Measurements | analyse_SAR.CWOSL |
| Analyse SAR TL measurements | analyse_SAR.TL |
| Analyse Thermochronometry Data | analyse_ThermochronometryData |
| Cosmic-ray removal and spectrum smoothing for RLum.Data.Spectrum objects | apply_CosmicRayRemoval |
| Apply crosstalk | apply_Crosstalk |
| Apply spectral efficiency correction to RLum.Data.Spectrum objects | apply_EfficiencyCorrection |
| as() - RLum-object coercion | as |
| Base datasets | BaseDataSet BaseDataSet.ConversionFactors BaseDataSet.FractionalGammaDose BaseDataSet.GrainSizeAttenuation |
| Channel binning for RLum.Data-class objects | bin_RLum.Data bin_RLum.Data,RLum.Data.Curve-method bin_RLum.Data,RLum.Data.Spectrum-method |
| Estimate the amount of grains on an aliquot | calc_AliquotSize |
| Calculate the Average Dose and the dose rate dispersion | calc_AverageDose |
| Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution | calc_CentralDose |
| Calculate dose rate of slices in a spherical cobble | calc_CobbleDoseRate |
| Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution | calc_CommonDose |
| Calculate the cosmic dose rate | calc_CosmicDoseRate |
| Modelling Exponential Exposure Distribution | calc_EED_Model |
| Fading Correction after Huntley & Lamothe (2001) | calc_FadingCorr |
| Calculate the Fast Ratio for CW-OSL curves | calc_FastRatio |
| Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution | calc_FiniteMixture |
| Apply the model after Fuchs & Lang (2001) to a given De distribution | calc_FuchsLang2001 |
| Calculate De value based on the gSGC by Li et al., 2015 | calc_gSGC |
| Calculate Global Standardised Growth Curve (gSGC) for Feldspar MET-pIRIR | calc_gSGC_feldspar |
| Apply a simple homogeneity test after Galbraith (2003) | calc_HomogeneityTest |
| Apply the Huntley (2006) model | calc_Huntley2006 |
| Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution | calc_IEU |
| Apply fading correction after Lamothe et al., 2003 | calc_Lamothe2003 |
| Apply the maximum age model to a given De distribution | calc_MaxDose |
| (Un-)logged minimum age model (MAM) after Galbraith et al. (1999) | calc_MinDose |
| Calculate Moran's I | calc_MoransI |
| Calculate Lx/Tx ratio for decomposed CW-OSL signal components | calc_OSLLxTxDecomposed |
| Calculate 'Lx/Tx' ratio for CW-OSL curves | calc_OSLLxTxRatio |
| Calculation of the source dose rate via the date of measurement | calc_SourceDoseRate |
| Function to calculate statistic measures | calc_Statistics |
| Calculates the Thermal Lifetime using the Arrhenius equation | calc_ThermalLifetime |
| Calculate the Lx/Tx ratio for a given set of TL curves -beta version- | calc_TLLxTxRatio |
| Obtain the equivalent dose using the approach by Woda and Fuchs 2008 | calc_WodaFuchs2008 |
| Combine Dose Rate and Equivalent Dose Distribution | combine_De_Dr |
| Convert Nuclide Activities to Abundance and Vice Versa | convert_Activity2Concentration |
| Export Risoe BIN-file(s) to CSV-files | convert_BIN2CSV |
| Dose-rate conversion function | convert_Concentration2DoseRate |
| Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions | convert_CW2pHMi |
| Transform a CW-OSL curve into a pLM-OSL curve | convert_CW2pLM |
| Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions | convert_CW2pLMi |
| Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions | convert_CW2pPMi |
| Export measurement data produced by a Daybreak luminescence reader to CSV-files | convert_Daybreak2CSV |
| Export PSL-file(s) to CSV-files | convert_PSL2CSV |
| Convert portable OSL data to a Risoe.BINfileData object | convert_PSL2Risoe.BINfileData |
| Converts RLum.Analysis and RLum.Data.Curve objects to RLum2Risoe.BINfileData objects | convert_RLum2Risoe.BINfileData |
| Converting equivalent dose values from seconds (s) to Gray (Gy) | convert_Second2Gray |
| Converts Single-Grain Data to Multiple-Grain Data | convert_SG2MG |
| Emission Spectra Conversion from Wavelength to Energy Scales (Jacobian Conversion) | convert_Wavelength2Energy |
| Export XSYG-file(s) to CSV-files | convert_XSYG2CSV |
| Dead-time (linearity) Correction for Photomultiplier tubes (PMT) | correct_PMTLinearity |
| All examples | ExampleData |
| Example data for calc_CobbleDoseRate() | ExampleData.CobbleData |
| Example De data sets for the package Luminescence | ExampleData.DeValues |
| Example data for feldspar fading measurements | ExampleData.Fading |
| Example portable OSL curve data for the package Luminescence | ExampleData.portableOSL |
| Example data as RLum.Data.Image objects | ExampleData.RLum.Data.Image |
| Example data for scale_GammaDose() | ExampleData.ScaleGammaDose |
| Example OSL surface exposure dating data | ExampleData.SurfaceExposure |
| Example TR-OSL data | ExampleData.TR_OSL |
| Collection of External Data | extdata |
| Extract Irradiation Times from an XSYG-file or 'RLum.Analysis' object | extract_IrradiationTimes |
| Extract Pixel Values through Circular Region-of-Interests (ROI) from an Image | extract_ROI |
| Non-linear Least Squares Fit for CW-OSL curves -beta version- | fit_CWCurve |
| Fit a dose-response curve for luminescence data (Lx/Tx against dose) | fit_DoseResponseCurve |
| Luminescence Emission Spectra Deconvolution | fit_EmissionSpectra |
| Fit Isothermal Holding Data | fit_IsothermalHolding |
| Non-linear Least Squares Fit for LM-OSL curves | fit_LMCurve |
| Fitting and Deconvolution of OSL Lifetime Components | fit_OSLLifeTimes |
| Nonlinear Least Squares Fit for OSL surface exposure data | fit_SurfaceExposure |
| Fitting Thermal Quenching Data | fit_ThermalQuenching |
| Collection of layout definitions | get_Layout |
| Function to get the right answer | get_rightAnswer |
| General accessor function for RLum-class objects | get_RLum get_RLum,list-method get_RLum,NULL-method get_RLum,RLum.Analysis-method get_RLum,RLum.Data.Curve-method get_RLum,RLum.Data.Image-method get_RLum,RLum.Data.Spectrum-method get_RLum,RLum.Results-method |
| Import Luminescence Data into R | import_Data |
| Length retrieval function for RLum-class objects | length_RLum length_RLum,RLum.Analysis-method length_RLum,RLum.Data.Curve-method length_RLum,RLum.Results-method |
| Melt RLum-class objects into a flat data.frame | melt_RLum melt_RLum,list-method melt_RLum,RLum.Analysis-method melt_RLum,RLum.Data.Curve-method |
| Merge Risoe.BINfileData objects or Risoe BIN-files | merge_Risoe.BINfileData |
| General merge function for RLum-class objects | merge_RLum |
| Name retrieval function for RLum-class objects | names_RLum names_RLum,list-method names_RLum,RLum.Analysis-method names_RLum,RLum.Data.Curve-method names_RLum,RLum.Data.Image-method names_RLum,RLum.Data.Spectrum-method names_RLum,RLum.Results-method |
| Normalisation of RLum-class objects | normalise_RLum normalise_RLum,list-method normalise_RLum,RLum.Analysis-method normalise_RLum,RLum.Data.Curve-method normalise_RLum,RLum.Data.Image-method normalise_RLum,RLum.Data.Spectrum-method |
| Function to create an Abanico Plot. | plot_AbanicoPlot |
| Create De(t) plot | plot_DetPlot |
| Plot a dose-response curve for luminescence data (Lx/Tx against dose) | plot_DoseResponseCurve |
| Create a Dose-Response Curve Summary Plot | plot_DRCSummary |
| Visualise dose recovery test results | plot_DRTResults |
| Plot filter combinations along with the (optional) net transmission window | plot_FilterCombinations |
| Fit and plot a dose-response curve for luminescence data (Lx/Tx against dose) | plot_GrowthCurve |
| Plot a histogram with separate error plot | plot_Histogram |
| Plot kernel density estimate with statistics | plot_KDE |
| Moran Scatter Plot: Visualizing Spatial Dependency | plot_MoranScatterplot |
| Visualise natural/regenerated signal ratios | plot_NRt |
| Plot Posterior OSL-Age Summary | plot_OSLAgeSummary |
| Function to create a Radial Plot | plot_RadialPlot |
| Plot Single Luminescence Curves from a Risoe.BINfileData-class object | plot_Risoe.BINfileData |
| General plot function for RLum S4 class objects | plot_RLum |
| Plot function for an 'RLum.Analysis' S4 class object | plot_RLum.Analysis |
| Plot function for an RLum.Data.Curve S4 class object | plot_RLum.Data.Curve |
| Plot function for an 'RLum.Data.Image' S4 class object | plot_RLum.Data.Image |
| Plot function for an RLum.Data.Spectrum S4 class object | plot_RLum.Data.Spectrum |
| Plot function for an RLum.Results S4 class object | plot_RLum.Results |
| Create Regions of Interest (ROI) Graphic | plot_ROI |
| Plot a disc with its values | plot_SingleGrainDisc |
| Create a violin plot | plot_ViolinPlot |
| Import Risø BIN/BINX-files into R | read_BIN2R |
| Import Risø BINX-data from the BINX Log File | read_BINXLOG2R |
| Import measurement data produced by a Daybreak TL/OSL reader into R | read_Daybreak2R |
| Import Luminescence Data from Helios Luminescence Reader | read_HeliosOSL2R |
| Import SUERC portable OSL Reader PSL files into R | read_PSL2R |
| Import RF-files to R | read_RF2R |
| Import Princeton Instruments (TM) SPE-file into R | read_SPE2R |
| Import TIFF Image Data into R | read_TIFF2R |
| Import XSYG files into R | read_XSYG2R |
| Strips records from RLum-class objects | remove_RLum remove_RLum,list-method remove_RLum,RLum.Analysis-method |
| Remove Signal Background from 'RLum.Data.Curve' Objects | remove_SignalBackground |
| General replication function for RLum-class objects | replicate_RLum replicate_RLum,RLum-method |
| Create a HTML-report for (RLum) objects | report_RLum |
| Class '"Risoe.BINfileData"' | Risoe.BINfileData-class set_Risoe.BINfileData,ANY-method |
| Convert Risoe.BINfileData object to an RLum.Analysis object | Risoe.BINfileData2RLum.Analysis |
| Class '"RLum"' | RLum-class |
| Class '"RLum.Analysis"' | RLum.Analysis-class |
| Class '"RLum.Data.Curve"' | RLum.Data.Curve-class |
| Class '"RLum.Data.Image"' | RLum.Data.Image-class |
| Class '"RLum.Data.Spectrum"' | RLum.Data.Spectrum-class |
| Class '"RLum.Results"' | RLum.Results-class |
| Calculate the gamma dose deposited within a sample taking layer-to-layer variations in radioactivity into account (according to Aitken, 1985) | scale_GammaDose |
| General setter function for Risoe.BINfileData objects | set_Risoe.BINfileData |
| General setter function for RLum-class objects | set_RLum set_RLum,RLum.Analysis-method set_RLum,RLum.Data.Curve-method set_RLum,RLum.Data.Image-method set_RLum,RLum.Data.Spectrum-method set_RLum,RLum.Results-method |
| Show the structure of RLum-class and Risoe.BINfileData-class objects | show show,Risoe.BINfileData-method show,RLum.Analysis-method show,RLum.Data.Curve-method show,RLum.Data.Image-method show,RLum.Data.Spectrum-method show,RLum.Results-method |
| Smoothing of data for RLum-class objects | smooth_RLum smooth_RLum,list-method smooth_RLum,RLum.Analysis-method smooth_RLum,RLum.Data.Curve-method |
| Sort data for RLum-class and Risoe.BINfileData-class objects | sort_RLum sort_RLum,list-method sort_RLum,Risoe.BINfileData-method sort_RLum,RLum.Analysis-method |
| sTeve - sophisticated tool for efficient data validation and evaluation | sTeve |
| General structure function for RLum-class objects | structure_RLum structure_RLum,list-method structure_RLum,RLum.Analysis-method |
| Simple Subsetting of Single Grain Data from Risø BIN/BINX files | subset_SingleGrainData |
| Create a DRAC input data template (v1.2) | template_DRAC |
| Trim Channels of RLum.Data-class Objects | trim_RLum.Data |
| Tune data for experimental purpose | tune_Data |
| Use DRAC to calculate dose rate data | use_DRAC |
| Verify single grain data sets and check for invalid grains, i.e. zero-light level grains | verify_SingleGrainData |
| Convenience data visualisation function | view view,Risoe.BINfileData-method view,RLum.Analysis-method view,RLum.Data-method view,RLum.Results-method |
| Export Risoe.BINfileData into Risø BIN/BINX-file | write_R2BIN |
| Export RLum.Data.Image and RLum.Data.Spectrum objects to TIFF Images | write_R2TIFF |
| Export RLum-objects to CSV | write_RLum2CSV |
